B Cell Sample Preparation for Flow Cytometry and Immunophenotyping

Automate and standardize your B cell sample preparation workflow

How Curiox Can Help

  • Preserves cell viability and functionality with centrifuge-free B cell washing
  • Automated flow cytometry sample preparation at scale
  • Standardize antibody staining across fragile B cell subpopulations

Learn more 

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B cells, or B lymphocytes, are a type of white blood cell that plays a crucial role in the adaptive immune system. They are primarily responsible for producing antibodies that recognize and bind to specific antigens.

B cells are central to humoral immunity, the aspect of immunity that involves the production of antibodies circulating in body fluids. They can present antigens to T cells, aiding in the activation of other immune responses. Some B cells, after an initial infection, can become memory B cells, which provide long-term immunity by quickly responding to future exposures to the same antigen.

Clinical relevance

B cells play a role in vaccines (which stimulate B cell responses for long-lasting immunity), autoimmune diseases (abnormal B cell activity can trigger the immune system to mistakenly attack the body’s own tissue), immunodeficiencies (defects in B cell development can lead to increased susceptibility to infections), and B cell lymphomas (certain cancers originate from malignant B cells).

B cells under flow cytometry analysis -- Curiox laminar wash sample preparation

B Cell Research Areas and Workflow Challenges

B cell sample preparation presents distinct challenges. Subpopulations are fragile and sensitive to mechanical stress, making centrifugation-based workflows a persistent source of cell loss, viability reduction, and staining variability in B lymphocyte flow cytometry. These issues compound in high-parameter panels, where preparation inconsistency affects resolution across many markers simultaneously.

B cells are commonly analyzed using:

  • Single-cell analysis. B cell subpopulations require a high level of precision; mechanical disruption during preparation can compromise downstream data quality.
  • High-parameter flow cytometry. Provides a detailed view of B cell diversity, particularly in comprehensive B cell immunophenotyping panels of 20+ markers.
  • Mass cytometry (CyTOF). Used for deep immunophenotyping of B cell subsets where gentle final-wash steps are critical to sample integrity before acquisition.

Centrifuge-Free B Cell Sample Preparation with C-FREE Technology

Centrifugation introduces mechanical stress that can reduce B cell viability, cause inconsistent pelleting, and introduce preparation artifacts — all of which affect data quality in immunophenotyping and single-cell workflows.

Curiox C-FREE™ technology enables fully automated B cell sample preparation on the Pluto Workstation — from antibody cocktailing through centrifuge-free cell washing and staining in a single session. For high-parameter B cell immunophenotyping panels, this means:

  • Automated antibody cocktailing and FMO control generation. For panels of 20+ markers, the Antibody Cocktailing Wizard automatically assigns mastermix, single-color controls, and FMO controls — eliminating a common source of manual error in complex B cell panels.
  • Centrifuge-free B cell washing and staining in one station. Pluto performs washing and staining on-deck without centrifugation, reducing mechanical stress on fragile B cell subpopulations and standardizing washing.
  • Reproducibility across runs and operators. Automated liquid handling removes pipetting variability, delivering consistent staining results across B cell immunophenotyping workflows.
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Researcher Perspectives

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The Laminar Wash technology allows sample staining for flow cytometry completely within a BSL2 cabinet without centrifugation to work safely with these infectious samples.
Sherin Rouhani, MD, PhD
Mass General Cancer Center
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